2009 H1N1

GenBank: FJ966977.1
 
Influenza A virus
(A/California/07/2009(H1N1)) segment 3 polymerase PA (PA) gene, complete cds
 
LOCUS       FJ966977                2151 bp    cRNA    linear   VRL 29-APR-2009
DEFINITION  Influenza A virus (A/California/07/2009(H1N1)) segment 3 polymerase
            PA (PA) gene, complete cds.
ACCESSION   FJ966977
VERSION     FJ966977.1  GI:227831814
PROJECT     GenomeProject:37813
DBLINK      Project:37813
KEYWORDS    .
SOURCE      Influenza A virus (A/California/07/2009(H1N1))
  ORGANISM  Influenza A virus (A/California/07/2009(H1N1))
            Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
            Influenzavirus A.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Shu,B., Balish,A., Garten,R., Smith,C., Emery,S., Barnes,J.,
            Deyde,V., Klimov,A. and Cox,N.
  TITLE     Human infection with novel swine H1N1 influenza
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Shu,B., Balish,A., Garten,R., Smith,C., Emery,S., Barnes,J.,
            Deyde,V., Klimov,A. and Cox,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-APR-2009) WHO Collaborating Center for Surveillance,
            Epidemiology and Control of Influenza, Influenza Division, Centers
            for Disease Control and Prevention, Atlanta, 1600 Clifton Road,
            N.E., Atlanta, GA 30333, USA
COMMENT     Swine influenza A (H1N1) virus isolated during human swine flu
            outbreak of 2009.  For more information, see http://www.cdc.gov/
            
            Some of the information does not have GenBank feature identifiers
            and is being provided in the comment section.
            
            ##EpifluData-START##
            Isolate                A/California/07/2009
            Subtype                H1N1
            Segment_name           PA
            Host_gender            M
            Host_age               54
            Passage_history        M1
            Adamantane_resistance  resistant
            Zanamivir_resistance   sensitive
            Oseltamivir_resistance sensitive
            Country                USA
            State/Province         California state
            Collection_day         9
            Collection_month       4
            Collection_year        2009
            EPI_accession          EPI176501
            ##EpifluData-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Influenza A virus (A/California/07/2009(H1N1))"
                     /mol_type="viral cRNA"
                     /strain="A/California/07/2009"
                     /serotype="H1N1"
                     /host="Homo sapiens; gender M; age 54"
                     /db_xref="taxon:641809"
                     /segment="3"
                     /country="USA: California state"
                     /collection_date="09-Apr-2009"
     gene            1..2151
                     /gene="PA"
     CDS             1..2151
                     /gene="PA"
                     /codon_start=1
                     /product="polymerase PA"
                     /protein_id="ACP41957.1"
                     /db_xref="GI:227831815"
                     /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEV
                     CFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGVEK
                     PKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKAD
                     YTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQS
                     LPPNFPSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLC
                     HQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNY
                     LMAWKQVLAELQDIENEEKIPRTKNMKRTSQLKWALGENMAPEKVDFDDCKDVGDLKQ
                     YDSDEPEPRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEV
                     SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGR
                     SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVR
                     TNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGES
                     PRGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFD
                     LGGLYEAIEECLINDPWVLLNASWFNSFLTHALK"
ORIGIN      
        1 atggaagact ttgtgcgaca atgcttcaat ccaatgatcg tcgagcttgc ggaaaaggca
       61 atgaaagaat atggggaaga tccgaaaatc gaaactaaca agtttgctgc aatatgcaca
      121 catttggaag tttgtttcat gtattcggat ttccatttca tcgacgaacg gggtgaatca
      181 ataattgtag aatctggtga cccgaatgca ctattgaagc accgatttga gataattgaa
      241 ggaagagacc gaatcatggc ctggacagtg gtgaacagta tatgtaacac aacaggggta
      301 gagaagccta aatttcttcc tgatttgtat gattacaaag agaaccggtt cattgaaatt
      361 ggagtaacac ggagggaagt ccacatatat tacctagaga aagccaacaa aataaaatct
      421 gagaagacac acattcacat cttttcattc actggagagg agatggccac caaagcggac
      481 tacacccttg acgaagagag cagggcaaga atcaaaacta ggcttttcac tataagacaa
      541 gaaatggcca gtaggagtct atgggattcc tttcgtcagt ccgaaagagg cgaagagaca
      601 attgaagaaa aatttgagat tacaggaact atgcgcaagc ttgccgacca aagtctccca
      661 ccgaacttcc ccagccttga aaactttaga gcctatgtag atggattcga gccgaacggc
      721 tgcattgagg gcaagctttc ccaaatgtca aaagaagtga acgccaaaat tgaaccattc
      781 ttgaggacga caccacgccc cctcagattg cctgatgggc ctctttgcca tcagcggtca
      841 aagttcctgc tgatggatgc tctgaaatta agtattgaag acccgagtca cgagggggag
      901 ggaataccac tatatgatgc aatcaaatgc atgaagacat tctttggctg gaaagagcct
      961 aacatagtca aaccacatga gaaaggcata aatcccaatt acctcatggc ttggaagcag
     1021 gtgctagcag agctacagga cattgaaaat gaagagaaga tcccaaggac aaagaacatg
     1081 aagagaacaa gccaattgaa gtgggcactc ggtgaaaata tggcaccaga aaaagtagac
     1141 tttgatgact gcaaagatgt tggagacctt aaacagtatg acagtgatga gccagagccc
     1201 agatctctag caagctgggt ccaaaatgaa ttcaataagg catgtgaatt gactgattca
     1261 agctggatag aacttgatga aataggagaa gatgttgccc cgattgaaca tatcgcaagc
     1321 atgaggagga actattttac agcagaagtg tcccactgca gggctactga atacataatg
     1381 aagggagtgt acataaatac ggccttgctc aatgcatcct gtgcagccat ggatgacttt
     1441 cagctgatcc caatgataag caaatgtagg accaaagaag gaagacggaa aacaaacctg
     1501 tatgggttca ttataaaagg aaggtctcat ttgagaaatg atactgatgt ggtgaacttt
     1561 gtaagtatgg agttctcact cactgacccg agactggagc cacacaaatg ggaaaaatac
     1621 tgtgttcttg aaataggaga catgctcttg aggactgcga taggccaagt gtcgaggccc
     1681 atgttcctat atgtgagaac caatggaacc tccaagatca agatgaaatg gggcatggaa
     1741 atgaggcgct gccttcttca gtctcttcag cagattgaga gcatgattga ggccgagtct
     1801 tctgtcaaag agaaagacat gaccaaggaa ttctttgaaa acaaatcgga aacatggcca
     1861 atcggagagt cacccagggg agtggaggaa ggctctattg ggaaagtgtg caggacctta
     1921 ctggcaaaat ctgtattcaa cagtctatat gcgtctccac aacttgaggg gttttcggct
     1981 gaatctagaa aattgcttct cattgttcag gcacttaggg acaacctgga acctggaacc
     2041 ttcgatcttg gggggctata tgaagcaatc gaggagtgcc tgattaatga tccctgggtt
     2101 ttgcttaatg catcttggtt caactccttc ctcacacatg cactgaagta g
//

[ Ion Ivanovici - The Waves of the Danube ]
 

NCBI Influenza Virus Resource
www.ncbi.nlm.nih.gov/genomes/FLU/SwineFlu.html